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06/17

  • annealed linker oligos
  • golden gate into RFP construct 

06/18

  • transformed golden gate product

06/19

  • all linkers grew colonies except 9TCS6 
  • picked colonies for all except 9TCS6
  • retransformed 9TCS6

06/23 

  • digest and gel verification 
  • 3TCS3, 3TCS9, 9TCSX show correct band pattern

06/24

  • sent 9TCSX for sequencing - internal BsaI cut site in Gal4VP16 caused failed golden gates -> SDM to mutate out internal cut site

07/14

07/15

  • transformed golden gate reactions – no colonies

07/16

  • replate transformations - no colonies

07/17

  • redo golden gates with extra ligation step,
  • transform reactions

07/19

  • inoculate liquid cultures

07/20

  • miniprep, digest, gel - all appear correct 

07/21

  • sequence all linkers 

07/23

  • Correct linkers - innoculate midis:
    • 3t9
    • 6t6
    • 6t12
    • 9t3
    • 9t6
    • 12t6
  • Ambiguous sequencing - repeat + innoculate minis:
    • 9T9
    • 9T12 
    • 15T15 
  • Failed linkers - innoculate minis, digest, gel, sequencing
    • 3T3 - sequencing good > innoculate midi
    • 3T15 - failed gel > mini
    • 6T9 - sequencing not good > mini
    • 9t15 - sequencing not good > mini
    • 12t9 - sequencing not good > mini
    • 12t12 - sequencing not good > mini

    • 15T3
    • 15T9

07/24

  • Midis verified - all correct:
    • 3t9
    • 6t6
    • 6t12
    • 9t3
    • 9t6
    • 12t6
  • Failed linkers - mini, digest, gel - all correct > sequencing:
    • 3T15
    • 15T3
    • 15t9
  • Correct sequencing

07/27

  • Midis 

hEF1a:CD79A-XnTCSXc-Gal4VP16

3TCS3

 9TCS3 

15TCS3

...

midi verified 

...

midi verified 

...

midi verified
 6TCS69TCS612TCS6 
 

...

midi verifiedmidi verifiedmidi verified

...

 
3TCS9

6TCS9

9TCS9

12TCS9

15TCS9

...

midi verified

...

midi verified

...

midi verified

...

midi verifiedplated 8/22
 6TCS12

9TCS12

12TCS12

 
 

...

midi verified

...

midi verified

...

midi verified 

3TCS15

 

9TCS15

 

15TCS15

...

annealed linker oligos

golden gate 06/17

...

midi culture 8/22 

midi in seq

 midi verified

...