Introduction- Scott's script to consolidate all of the OTU calling scripts and submit them to the cluster with one command
(smile_train: Get's you where you want to go and your happy)
Works on coyote and maybe the broad, but maybe not other clusters.
You should install in lib (bin get crowded)- each person should install their own.
Get the git from:
https://github.com/swo/smile_train
by using git commands:
git clone https://github.com/swo/smile_train
To get some information, you have to have this documentation for each any time this code is modified (i.e. below, this is ok for 5/12/14), you need to have sphinx-build, which isn't in on coyote. If you can't generate this, don't give up, just email Scott (swo@mit.edu).
(open the html file within the _build folder)
Alter the config.file (you either have to link to usearch etc).