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Compute capabilities

  • beagle (beagle.darwinproject.mit.edu): Obsolescent.
  • coyote (coyote.mit.edu): We'll have 50 TB soon!

There are also older, Alm-specific machines that might be reorganized in the coming months.

  • nostoc (nostoc.mit.edu, almlab.mit.edu): Runs the lab website, AdaptML, and AnGST servers
  • pylori
  • vulgaris
  • subtilis

Codebase

  • Scott (swo)
    • sycamore (github.com/almlab/sycamore): Strips the Greengenes tree files to make Newick trees.
  • Lawrence
    • AnGST
    • AdaptML
  • Albert
    • Tree.py
    • LeafStripper
  • Chris Smillie
    • SLiME
  • Jonathan (yonatanf)
    • SparCC (bitbucket.com/yonatanf/sparcc)
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