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PROTEIN RECEPTOR GROUP


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Overview: 

The plaques found in the brain of a patient with Alzheimer's disease comprise beta-amyloid protein oligomers, which are responsible for the degenerative symptoms of the condition. In order to diagnose and/or treat Alzheimer's disease, we must first be able to detect the presence of these beta-amyloid oligomers. One of the possible methods of detection is the use of beta-amyloid oligomer-specific transmembrane receptors.

Leukocyte immunoglobulin-like receptor (LilrB2) and its murine homolog Paired Immunoglobulin-like Receptor B (PirB) are trans-membrane receptors capable of selectively binding beta-amyloid oligomers (of x or more monomers). It belongs to a family of proteins that bind to MHC1 molecules on antigen presenting cells and is only expressed in monocytes and B-cells (and at lower levels in dendritic cells and natural killer cells) in humans. When beta-amyloid oligomers bind to the extracellular domain of LilrB2, it is activated and then goes on to recruit cofilin to its intracellular domain. 

In our proposed detection model, we would construct a fusion protein where a linker, TEV protease cleavage site and transcription factor (in that order) are fused to the intracellular domain of LilrB2. We would also fuse a TEV protease to cofilin. In that way, when beta-amyloid oligomers bind to the receptor, thus activating it, the TEV protease on the recruited cofilin cleaves at the cleavage site releasing the transcription factor in to the cytosol. The cleaved portion will be guided to the nucleus of the cell and will go on to activate the subsequent processing module.

 

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Experiments:

 

A Testing membrane localization of receptor protein

B Testing oligomer binding to receptors

C Comparing levels of endogenous and exogenous cofilin

D Testing TEVp-Cofilin cleavage with inactive receptors

E Testing TEVp-Cofilin cleavage with active receptors

F Whole system characterization

G Evaluating production of abeta by HEK293-APPSwe

 

 

 

 

 

 

TO DO

To Do: 

  •  Troubleshoot liquid culture not growing
    •  retransform (use high efficiency transformation kit)
      •  regolden gate 
      •  transform and plate 
    •  keep track of transformation efficiency (aim for 5*10^7) 
    •  if it doesn't work - add a positive control golden gate (ask Jeremy for it) 
      •  look into microfluidics paper for positive control plasmids 
  •  Making pEXPR for LilrB2 and PirB
    •  Miniprep liquid culture for second golden gate
    •  Verify DNA for both golden gates
      •  run a gel
        •  first golden gate
        •  second golden gate
      •  send for sequence
        •  first golden gate
        •  second golden gate
    •  LR into pDEST 
  •  HEK293 Transfection
    •  make media
    •  split cells 
    •  make a plan for what controls we are going to use
    •  transfect
    •  measure 
    •  report transfection efficiency from FACs data (aim for 60-70%)
      •  look for how to optimize transfection 
  •  make ggDONR cell stock 
  •  make promoter cell stock
    •  transform promoter DNA (wait for the remaining two promoter DNA)
July

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titleAugust

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August 23 + 24

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August 31

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titleSeptember

September 1 + 2

September 3 + 4

Sep 8

 

 

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TO DO (cloning things):

  •  LilrB2 PCRs (didn't work (sad))
8/18
  •  LR hEF1a and TRE LilrB2
    •  Pick LilrB2 golden gate colonies --> LilrB2 pENTR
    •  Miniprep LilrB2 pENTR
    •  Run digest on LilrB2 pENTR
    •  Send LilrB2 pENTR for sequencing
    •  If digest looks good: LR hEF1a: and TRE: LilrB2
    •  Transform
    •  Pick pEXPR hEF1a:LilrB2 and TRE:LilrB2
    •  Miniprep pEXPR hEF1a:LilrB2 and TRE:LilrB2
    •  Run digest on ^
    •  If digest looks good, innoculate for midi
    •  Midiprep hEF1a:LilrB2 and TRE:LilrB2
  •  8/21
  •  8/22
  •  8/22
  •  8/22
  •  8/22
  •  8/23
  •  8/24
  •  8/25
  •  8/26
  •  8/26
  •  8/26
  •  8/29
  •  Verify pEXPR hEF1a:PirB-YFP is actually a pEXPR - do the LR if it's not
8/21
  •  LR PirB-YFP with TRE
 
  •  Pick LilB2YFP/TCS colonies
  •  Miniprep + digest

For LilrB2TCS only:

  •  Send for sequencing
  •  LR (hEF1a + TREt)
  •  Transform
  •  Pick colonies
  •  Miniprep
  •  Digest
  •  TREt with XbaI (CS)
  •  hEF1a with ApaI (CS)
  •  Midiprep

8/28
8/29

 

8/29
9/3
9/4
9/5
9/6
9/6
9/7

 

 

 

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Experiments:

 

GroupDescriptionExperiments Included
ATesting membrane localization of receptor proteinA1, A2,
BTesting oligomer binding to receptorsB1, B2
CTesting recruitment of cofilin 
D  
E  

Experiments: