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TRELacIBufferEnzyme1.5
 
hEF1a:CD79AeYFPhEF1a
TRE:CD79BeYFP
hEF1a:Lyn
hEF1a:GMabHTRE:mKate
hEF1a:GMabLhEF1a:CD79A-TCSRFP-G4 SDM #1
hEF1a:CD79BCD79A-TCSRFP-G4 TRE:Syk-15-TEVpSDM #2
hEF1a:rtTACymR
hEF1a:Gal4VP16hEF1a-LacOCuO:mKate
CMV5-CuO:mKate
hEF1a:
TRE:Gal4VP16
pENTR hEF1a-LacO
pENTR LacI
TRE:Syk
CD79A-3T3-G4 1,2,3,4
hEF1a:CD79A-3T9-G4 1,2
hEF1a:CD79A-3T15-G4 1,2,3,4
Number1 - maybe, top band a little high2 - success3 - maybe, top band a little low4 - can't tell because bottom band is hard to distinguish5 - same as 4, plus it's more faintNumber12345678

9 - maybe, there are also faint bands around 0.7kb and 2.0kb though

10 - too faint to tell

11 - fail, but extra bands at 4kb and at low kbs

12 - fail, but extra bands at 4kb and at low kbs

13 - fail, but extra band at 4kb

14 - fail, but extra band at 4kb

15 - fail, but extra band at 4kb

16 - fail, but extra band at 4kb

17

- fail, but extra band at 4kb

18 - fail, but extra band at 4kb

EnzymeEnzyme

ApaI

Cuts in hEF1a, CD79A & backbone

ApaI

Cuts in hEF1a, and backbone

ApaI, NcoI

Cuts in Lyn, hEF1a and backbone

BglII

Cuts in GmabH, hEF1a and backbone

KpnI

Cuts in GmabL, hEF1a, and backbone

PvuII

Cuts in CD79A, TCS and backbone

PvuII

Cuts in CD79B, TCS and backbone

PvuII

Cuts in syk, tevp and backbone

ApaI

Cuts in hEF1a, rtTA3 and backbone

XhoI

Cuts in hEF1a, Gal4VP16 and backbone

NheIPvuIIApaIXhoI

ApaI

cuts in hEF1a-LacO

ApaI

cuts in LacI

PvuII

cuts in syk

Virtual gelImage RemovedImage RemovedImage RemovedImage RemovedImage RemovedImage RemovedImage RemovedImage RemovedImage RemovedImage RemovedImage RemovedImage RemovedImage RemovedImage RemovedImage RemovedImage RemovedImage Removed
Concentration (ng/uL)1110.314201314.4983.51359.01086.1487.21161.9706.4441.9741.0483.1420.61265.3229.8196.7321.8
BlpI, XbaIStuIBsaIBsaI   PvuIIPvuIIPvuII
Virtual gelImage AddedImage AddedImage Added

Failure mode

Image Added

Success bands

5 kb

3.8 kb

0.85 kb

Failure mode

Image Added

Success bands

5 kb

3.8 kb

0.85 kb

   Image AddedImage AddedImage Added
Concentration (ng/uL)            
Buffer            
Enzyme           
DNA volume           
H2O volume           0.450328740.3521126760.38040170.5083884090.3679175860.4603627661.0262725780.4303296320.707814271.131477710.6747638331.034982411.188777940.3951632022.1758050482.541942041.55376H2O volume11.5496712611.6478873211.61959811.4916115911.6320824111.5396372310.9737274211.5696703711.292185710.8685222911.3252361710.965017610.811222111.60483689.8241949529.4580579610.44624
Buffer volume1.51.51.51.51.51.51.51.51.51.51.5
Enzyme volume1.51.51.51.51.51.5Enzyme volume1.51.51.51.51.51.51.51.51.51.51.51.51.51.51.51.5

 

Geneious file locations:

PlasmidGeneious file locationFailure mode plasmid
Fluorescent colorsBCR2.0 > Lyla > Misc pEXPRspZDonor 1-GTW-2
   

1-5,9-12:

Image Added

13-18:

Image Added