...
pick_rep_set.py -i ${DATA}fwd_otu/uclust_picked_otus${PBS_ARRAYID}/ML1-${PBS_ARRAYID}_filt_otus.txt -f ${DATA}fwd_filt/dropletBC/ML1-${PBS_ARRAYID}_filt.fna -o ${DATA}fwd_otu/repSet/ML1-${PBS_ARRAYID}_rep.fna
Installing packages in R (for Slime but it might work in other waysand Running Slime on coyote (also note the trick about installing packages below):
ssh onto super-genius
Clone slime into the ~/lib/:
...