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foreach? python ../../latest_adaptml/habitats/trunk/AdaptML_Analyze.py tree=./All_simple_7_ur_particle.phy_phyml_tree.txt2 hab0=16 outgroup=ECK_1 write=./${f}${d}_dir/ thresh=0.025
foreach? perl parse_migration3.pl ./${f}${d}_dir/habitat.matrix > ./${f}${d}_dir/habitat.matrix.tab
foreach? end
Make a list of all of the migration.tab files
ls *_dir/migrationhabitat.matrix.tab > migration_list.txt2
Then use temp_dist2.pl to get the habitat number distribution.
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