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http://acesgrid.org/matlab.html
However, when I tried to log into geojr.acesgrid.org it didn't let me, so I followed the directions from the above web page with login.acesgrid.org and with -X and that worked. I also had to run it without the '-nojvm' flag when calling matlab.
The non-interface version also works as below:
if you want run interactively, you reverse a node:
qsub -I -l nodes=1
Then in the next terminal window, you login as you would normally with -X (maybe not as directed on the above webpage):
ssh -X aces
Then you ssh from aces onto the reserved node:
ssh -X reserved.node.name
This should work and bring up X11 (that's what I'm using):qsub -I -l nodes=1
module add matlab
matlab
And I imagine that if you wanted to do something else interactively, that the qsub command above would also work.
QIIME
You can also get qiime to work, using the qsub command above to get interactive computing and use:
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It's QIIME version 1.6 (I think) so it's got a few quirks that are different from the version 1.3 that was on beagle. You might need to change some variables names etc, but the QIIME documentation should be helpful for this. I still haven't been able to get anything working as a parallel job.
Space
So I was able to make my own directory in /data/ and /scratch/, but it didn't exist before I made it:
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