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perl ~/bin/split_fastq_qiime_1.8.pl|../../../../../../../../../download/attachments/91590224/split_fastq_qiime_1.8.pl?version=2&modificationDate=1394040210338\ <read> <number needed> <output prefix>
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Then, overlap each of the 100 files with SHERA where ${PBS_ARRAYID} is the process number for parallel processing:
perl concatReads_1.8.pl|../../../../../../../../../download/attachments/91590224/concatReads_1.8.pl?version=1&modificationDate=1394040328360\ fastq_1 fastq2 --qualityScaling illumina
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