This page is designed to serve as a repository for files that may be useful to group members. For information on uploading files, see notes below.
MD Analysis scripts
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Sample scripts for basic tasks in CHARMM
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The scripts.tar.gz tar ball contains following scripts, along with a small set of auxiliary (data) files. These scripts are also available on this link, and questions about how to use these scripts are addressed in this thread on the CHARMM forums.
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VMD TCL script to calculate density profile normal to z-axis
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denprofile_analysis.tcl TCL script for VMD to calculate density profile normal to z-axis. Run the script with argument "usage" for more info, or see following example:
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