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The scripts.tar.gz tar ball contains following scripts:
| Section |
|---|
SETUP
add-ions.str
gen-alpha-helix.inp
gen-dna.inp
gen-prot.inp
minimize.inp
rename-2pdb.str
setup-truncated-octahedron.str
solvent-box.str
solvent-shell.str
solvent-sphere.str DYNAMICS
dynamics.inp
noe-dynamics.inp
run-cpt-md.inp
run-pbc-md.inp
run-sdb-md.inp ANALYSIS
asa-protein.str
extract-coordinate-frame.inp
hbonds.inp
interaction-energy.inp
merge-orient-trajectory.inp
merge-recenter-trajectory.inp
rmsd-nucleotide.str
rmsd-residue.str
rmsd-rgyr.inp
rmsf-nucleotide.str
rmsf-residue.str
self-diffusion-coeff.inp
trp-anisotropy.inp |
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